PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0032s0620.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family NAC
Protein Properties Length: 313aa    MW: 35278.3 Da    PI: 6.8811
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0032s0620.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM108.86.4e-34612011128
                     NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......leleev.ikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk 79 
                             lp+G++F+Ptd+e++  +L++kv ++k      ++++   i+   +i++++P++Lp  v+++ +  +fF++ +k+y+tg+rk+r+++
  SapurV1A.0032s0620.1.p  61 LPAGVKFDPTDQEIL-GHLEAKVLSDKrklhplIDEFIPsIEGEnGICYTHPENLP-GVSNDGQIRHFFHRPSKAYTTGTRKRRKVH 145
                             799***********9.789999988885665543333333665557**********.566667778******************744 PP

                     NAM  80 ......sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                                   + +W++tgk+++v++ +g+++g kk+Lv+y   gr++k+ekt+Wvmh+y+l
  SapurV1A.0032s0620.1.p 146 tdedgsETRWHKTGKTRQVFA-GGTVKGFKKILVLYtnYGRQRKPEKTNWVMHQYHL 201
                             446555788************.99************66589**************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.53E-3853220IPR003441NAC domain
PROSITE profilePS5100534.12661220IPR003441NAC domain
PfamPF023652.0E-1562201IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MTWCSNNSVY ERAFQLVTSS SKEDAFVEAE TDEIPRISCP SCGHNFEVQD QVGIIHDLPG  60
LPAGVKFDPT DQEILGHLEA KVLSDKRKLH PLIDEFIPSI EGENGICYTH PENLPGVSND  120
GQIRHFFHRP SKAYTTGTRK RRKVHTDEDG SETRWHKTGK TRQVFAGGTV KGFKKILVLY  180
TNYGRQRKPE KTNWVMHQYH LGNNEEEKDG ELVVSKIFYQ TQPRQCSSSI KDSSLDHKSS  240
NQSDDHADNH PLAKNSTDLL DFCNPSYISY DPGNYSSEIP PQFLPNLVVQ GDGSSFIRLA  300
AETSKGKLQR KW*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP7700090.0KP770009.1 UNVERIFIED: Populus tomentosa MYB transcription factor R2R3 type-like (Potri.011G058400) mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006377419.10.0hypothetical protein POPTR_0011s05740g
RefseqXP_011001220.10.0PREDICTED: NAC domain-containing protein 8-like
SwissprotO494591e-119NAC73_ARATH; NAC domain-containing protein 73
TrEMBLU5FZ390.0U5FZ39_POPTR; Uncharacterized protein
STRINGPOPTR_0011s05740.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF122834108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28500.11e-120NAC domain containing protein 73